Basic Information
VIS ID
TVIS10019490
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q24.23
Reference genome
GRCh37/hg19
Start
137398209/136385966 (Hg38)
End
137398444/136386201 (Hg38)
Nearest miRNA
hsa-mir-1204/Upstream/1581021; hsa-mir-10400/Downstream/4346363;
Nearest TSS
ENST00000518652/Upstream/338919; ENST00000523232/Downstream/103247;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/927867, chr8-CpG: 119/Downstream/2110351
Nearby gene
KHDRBS3
Upstream sequence
TATTGCATGTAATTGTTAAGTAAGGTACAAGCACAGAAATCAACTGCTATTCAAGGAATTATAAAGTAACTTTATAAGCCTTATATAAATAAGCCTAGTA
Downstream sequence
tcaggaataaagttttgaatcattctactaatgaagaactttgaccatctgaattcctggctaagggtggtgggaatatggaatgagtactggaaaaaag
Target sequence
atctttgtgttactggactaatagggaaaaatgggtgttaggatgctgactggagtagttgatcccaataataaagaggaaactgggtagctgctacacaatggagacaagaaggctatatctggaatctacagaatattcttggattctcttaatatttccattgccaatagtagaagGTaatggaaaattgcaagaaccaaaataaggcaagaccaaaaatcattcaggccct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate