Basic Information
VIS ID
TVIS10019492
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Reference genome
GRCh37/hg19
Start
135524643
End
135524756
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
FRG2B
Upstream sequence
CTTTGTCCAAGTGTATTTGATTCATTCTTAGGGGTTCTACAAGTTAGGACACTCAAAAAATGTTTGTAATCTCTTTTTCTGTTTTCCCATGTTGCTTTCG
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
ggtgagggtgagggtgagggttagggtgagggttagggttagggttagggtgagggttagggttagggtgagggttagggttagggtgagggttagggttagggNNNNNNNNN
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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