Basic Information
VIS ID
TVIS10019493
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
43100231/43078681 (Hg38)
End
43100320/43078770 (Hg38)
Nearest miRNA
hsa-mir-1343/Upstream/7068477; hsa-let-7a-2/Downstream/480886;
Nearest TSS
ENST00000527297/Upstream/824969; ENST00000530300/Downstream/233193;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6568214, chr11-CpG: 49/Downstream/233119
Nearby gene
HNRNPKP3
Upstream sequence
tttaaaaaaaacaagctccaggattcattgattttttgaagggttttttgtttctctgtgtccttcagttctgctctgatcttagttatttcttgccttc
Downstream sequence
taatcacatatttctcacaaaactgtataagatagggaaattatcccaagcttcagataaggaaaaatagcagtcaaagagtaattatcttggcaaaggt
Target sequence
CAGAGTCAATTTAGTGATGAGAAACTAAaacagaatttagatttattctctactctgtgccagggactatgctgggcactctgtgtgtg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate