Basic Information
VIS ID
TVIS10019495
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr12
Reference genome
Start
End
95752
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
Upstream sequence
GGAACAGAGGGGAAGTCACCTCCCCAAATAACTTCTGAGGGATGGGAATGGAGCCTCCTGCCCTGCAGAACAGGGCCGGCACCAGGAGGTACAAGAGCCA
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
ttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagNNNNNNNNNNNNN
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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