Basic Information
VIS ID
TVIS10019496
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
133841512/133264926 (Hg38)
End
133841601/133265015 (Hg38)
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/682865;
Nearest TSS
ENST00000382841/Upstream/28831;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/28410, None/Downstream
Nearby gene
ANHX
Upstream sequence
TTTTTTGCAAATAGACTGGAAGTTCTCTTACCTTATCAAGGTAAATCAAGACATGGTTGCTGCTGACTTCTGTCCGGCTCACATGGTTAGATCTTTCAAG
Downstream sequence
ggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtt
Target sequence
gtcagggtgagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate