Basic Information
VIS ID
TVIS10019497
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Reference genome
GRCh37/hg19
Start
102521308
End
102521399
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
DDX11L9
Upstream sequence
GCAGCCTTTGCAACCTTCCACCCCAAAGGCCACCTCCTCCAGGAGGCCATCCTTGACCTACTCAGTCAGATATCACCTCTTGTCCCCAACACTGTTAttc
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
ggttagggttagggttagggttagggttagggttagggttagggttagggttagggtttagggttagggttagggttagggttaNNNNNNN
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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