Basic Information
VIS ID
TVIS10019498
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
69725/19725 (Hg38)
End
69814/19814 (Hg38)
Nearest miRNA
hsa-mir-6859-4/Upstream/2606; hsa-mir-11401/Downstream/515502;
Nearest TSS
ENST00000527434/Downstream/3096;
Nearest CpG islands
None/Target, None/Upstream, chr16-CpG: 29/Downstream/3029
Nearby gene
MIR6859-2
Upstream sequence
CCCTTACCAAGGAAAAAAAAGGGATGTTACCAACTGAGATCGATCAGTTCATCCAATCACAGATCATGAAACAGTAGTGTTCCCACCTAGGAGTGTTAGG
Downstream sequence
ctgactctaaccctaaccctgaccctgaccctgaccctgaccctgacccttgaccctgaccctgaccctgacccttgaccctgacccCGatttcattcat
Target sequence
ctcaccctgaccctcaccctaccctgaccctcaccctgaccctgaccctgaccctcaccctgaccctgactctgaccctgaccctgacc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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