Basic Information
VIS ID
TVIS10019499
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
105574/105574 (Hg38)
End
105673/105673 (Hg38)
Nearest miRNA
hsa-mir-1-2/Downstream/6583;
Nearest TSS
ENST00000575820/Upstream/32029; ENST00000580410/Downstream/52710;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/29547, chr18-CpG: 21/Downstream/6636
Nearby gene
ROCK1P1
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccctaaccctaaccct
Downstream sequence
cattgtgacatattgcaggaaacaaaatccaggtgatgtaactcttgtctagcctctgcctacaggaggcattgtgacatatctctacactgatcacaca
Target sequence
aaccctaaccctcaccctcaccctgaccctcaccctcaccctgaccctcaccctgaccctcaccctgaccctcaccctaaccctaaccctcaccctCGC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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