Basic Information
VIS ID
TVIS10019500
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
78016184/80258301 (Hg38)
End
78016296/80258413 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/7404919;
Nearest TSS
ENST00000575820/Upstream/10755;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/10513, None/Downstream
Nearby gene
PARD6G
Upstream sequence
ccgaacccgaatccaaacttgaacctgaaccctaagccttaccctaagcctaagcctaacccctaaccctaaccctaaccctaaacctaatgctcaccct
Downstream sequence
ttagggttagggttagggttagggttagggggttagggggttagggggttagggggttagggtgagggtgagggtgagggtgagggtgagggGTAGGGGT
Target sequence
tgagggtgagggtgagggtgagggtgagggtgagggtgagggttagggttagggtgagggtgagggtgagggtgagggtgagggtgagggtgagggttagggtgttagaggg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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