Basic Information
VIS ID
TVIS10019504
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
155259820/156030155 (Hg38)
End
155260329/156030664 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/572540;
Nearest TSS
ENST00000429181/Upstream/13318;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/13252, None/Downstream
Nearby gene
DDX11L16
Upstream sequence
AAAAAGCAGAACTTTTAGGCTAAAGATGGTTTTATTTTAACGTGATTGTGTTAAGTTGACAGTTTCAGGATGTGAAATATTGTTCATTCATCTATAGCTA
Downstream sequence
gggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttaggggttaggggttaggggttaggggtta
Target sequence
tagggttagggtgagggtgagggtgagggtgagggtgagggtgagggttagggttagggttagggttagggttaggggttaggggttagggttagggttaggggttaggggttagggttagggttaggggttagggttagggttaggggttaggggttaggggttaggggttagggtagggtagggtagggtagggagggttagggttagggttagggttagggttagggttagggttagggttagggttagggt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate