Basic Information
VIS ID
TVIS10019510
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1295435/1295320 (Hg38)
End
1295440/1295325 (Hg38)
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/232346; hsa-mir-10397/Downstream/13985;
Nearest TSS
ENST00000502646/Upstream/251; ENST00000605200/Downstream/26504;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Nearby gene
MIR4457
Upstream sequence
ATGCCTATTTTAAACATTATGAATATTCCTGGGAATTATTTTCATCCCATTGAAAAACTTTTGAGACATTAGCTCACCACAGCATTCAACCACCTGCCAA
Downstream sequence
GGCCGCGCTTCCCCGCCCGCGCGCCGCTCGCGCTCCCAGGGTGCAGGGACGCCAGCGAGGGCCCCAGCGGAGAGAGGTCGAATCGGCCTAGGCTGTGGGG
Target sequence
GTCTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate