Basic Information
VIS ID
TVIS10019511
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1298957/1298842 (Hg38)
End
1298957/1298842 (Hg38)
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/235868; hsa-mir-10397/Downstream/10468;
Nearest TSS
ENST00000502646/Upstream/3773; ENST00000605200/Downstream/22987;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2987, chr5-CpG: 18/Downstream/36120
Nearby gene
MIR4457
Upstream sequence
actgttaatatgtatatagtaccctctatgtattaggcactgttctccaaggacttaatatctattcgtttaatcttcacaactaccttcattgcaaggt
Downstream sequence
caccgtgcggatggacccgtttgtttaaccagtttgttaaaggacattttagcagggatttccctgctttgtagctattaaaataaaacagcgggggtcg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate