CHMP5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019513
Fusion event
HBV-CHMP5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33277297/33277299 (Hg38)
End
33277297/33277299 (Hg38)
Location type
Intron6
Target gene
CHMP5
Nearest miRNA
hsa-mir-101-2/Upstream/168534; hsa-let-7a-1/Downstream/190570;
Nearest TSS
ENST00000422679/Upstream/12357; ENST00000487080/Downstream/494;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/12179, chr9-CpG: 63/Downstream/13021
Upstream sequence
TGTGAGAAAATAAATATAGATTGCTTATGGAATTAAAGCTAATTAAAatgtcataaatattatcattccattaagtattcatcttcaatatcacctaatg
Downstream sequence
cgtcacccaggctggagtgcagtggtgcaatcacagctcactgcagccttggtctccctggcccaggtgatccccccacctcagcctcctgaatagctgg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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