Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019516
Fusion event
HBV-CHST11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
End
104941211/104547433 (Hg38)
Location type
Intron1
Target gene
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-186-5p ; hsa-mir-98-5p ; hsa-mir-6761-5p ; hsa-mir-6510-5p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-3185 ; hsa-mir-6125 ; hsa-mir-4719 ; hsa-mir-185-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-135b-3p ; hsa-mir-6824-5p ; hsa-mir-6867-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-7154-3p ; hsa-mir-6783-5p
Nearest miRNA
hsa-let-7i/Upstream/616878; hsa-mir-1178/Downstream/44200;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/88816, chr12-CpG: 18/Downstream/209551
Upstream sequence
ttcagttcctcgcctcctccagcctctggtggcttttagcattccttgggtcgtggctgcgtcgccccaatccctgcctctgtctccacgtggccttccc
Downstream sequence
atctctacaaaaaatacaaaaacttcgcagggtgtggtggcacacacctgtaattccagctatttgggaggttgaggcaggagaattgtttgaacctggg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.