AGBL4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019519
Fusion event
HBV-AGBL4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
50166055/49700383 (Hg38)
End
50166144/49700472 (Hg38)
Location type
Intron12
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/5154831; hsa-mir-101-1/Downstream/1359365;
Nearest TSS
ENST00000473358/Upstream/442972; ENST00000494555/Downstream/151046;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/801142, chr1-CpG: 34/Downstream/323273
Upstream sequence
atttactatgtctcacatatttattttgcttggctccattctttcaactttatttttctttctgtgatttaattttgctattttctttgggcctatcttt
Downstream sequence
aaggattgagataatttgaaaacatgattttaaaaatacctagttttaattatgaaacacattacatttatagaactaaataatatacattcttttcaaa
Target sequence
ttaaaacatagattaatctagaatcaaaatgagaaatttaacacaccaatatcccttactgtaaaaaataccaaaagaaatattcagca
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate