Basic Information
VIS ID
TVIS10019521
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q13
Reference genome
GRCh37/hg19
Start
110639110/109881533 (Hg38)
End
110639785/109882208 (Hg38)
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/567908; hsa-mir-10b/Downstream/187753;
Nearest TSS
ENST00000437798/Upstream/41156; ENST00000482065/Downstream/16220;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/86405, chr2-CpG: 91/Downstream/65307
Nearby gene
LIMS3-LOC440895
Upstream sequence
TTCCACTTCTACTTCCCTAGAGATGGGCTGCAAGTTATTTTCAGTAAGAAGCAGCCACAATTAATTCCCTGGCCAAGAGCAAAAATCCTGGAGGCCTTAT
Downstream sequence
agatgcccagttgtggtattgctagattgaatggtagttctattttcagttctccgagaaatctccatactgatttccatagaggttgtactaatttaca
Target sequence
cccctcccaccccctcactcttccaagtcaacactgtctatcactccacactctatgtccatgtgtacacattatttagctcccacctgtaagtgagaacatgcagaatttgtctatgtctgacttttttcacttaagataatggcttccagtttcattcatgttgctgccaaagacatgacttcattctctttttatgactgaatagaattccattgtgtatatgtaccacattttctttatccaatcatctgt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate