Basic Information
VIS ID
TVIS10019522
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q13
Reference genome
GRCh37/hg19
Start
111246880/110489303 (Hg38)
End
111246880/110489303 (Hg38)
Fragile sites / regions
FRA2S ; FRA2B
Nearest miRNA
hsa-mir-1285-2/Upstream/204360; hsa-mir-10b/Downstream/831710;
Nearest TSS
ENST00000437798/Upstream/16228; ENST00000458252/Downstream/41827;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/65273, chr2-CpG: 99/Downstream/87076
Nearby gene
LIMS3
Upstream sequence
tttcacacgatgcaacaacaaacagataCTATTAACTTGTTCATAGAAATTCCCTATGATAAAattcccatgataaactctatttggattagatatgcta
Downstream sequence
aaggaaaagaaatcattatatcaaaaagataactgcactcatatgtttatcacagcattattcacaatagcaaagatatggaatcagccaggtgctgtgg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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