CNTN6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019527
Fusion event
HBV-CNTN6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
1094450/1052766 (Hg38)
End
1094450/1052766 (Hg38)
Location type
Intronic
Target gene
CNTN6
Nearest miRNA
hsa-let-7g/Downstream/4197411;
Nearest TSS
ENST00000440867/Upstream/44631; ENST00000413210/Downstream/39810;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/743556, chr3-CpG: 182/Downstream/1045579
Nearby gene
CNTN6
Upstream sequence
taaatttgcatatacccagttagtgataacactgtcacaatttttcttccttgccctgtgataaagcaagcatttgggggtgtcaattctaagataggtc
Downstream sequence
TTTCCCTCCTGCTTCACCATAGTTTACAATTCTTTAGAGAAGAGGCGCTTTGGATACTTCCCCACATAATACAGACGATATCTTTCATTTCTAATTGCCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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