Basic Information
VIS ID
TVIS10019529
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
End
78213329/77292176 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/716531; hsa-mir-1243/Downstream/5461161;
Nearby gene
Upstream sequence
TCTTAAATCAGGAATTTTTACTGCAATTGTTATCTGATTAGATTGCAATGCTTTTCTAGTCTTTCTCATTATAAACCTGAAAGAAAAATGCTGAACTAAA
Downstream sequence
TCTTCTGCTAATTAGAACACCACTTGCTTGGCCCCTCAAACCACATCAGATCAGGTGCCAAAGAGTGAACCCTATAGAAGGAATGTAAAGAATTAGAGGC
Target sequence
GAAAAATCAAAATGTGTTT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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