Basic Information
VIS ID
TVIS10019531
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
36548367/36548265 (Hg38)
End
36548367/36548265 (Hg38)
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/400277; hsa-mir-103a-1/Downstream/2009237;
Nearest TSS
ENST00000502646/Upstream/246151; ENST00000504121/Downstream/58090;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/305703, chr5-CpG: 45/Downstream/141840
Nearby gene
SLC1A3
Upstream sequence
AGAGAAAGAAAATAGAAGCATATTCATCAAAGCAGCATAATGCCAACTTTCAAGAATACTTTAGAAAAGCAATTCCTTCGTAGGCCTGGCAGAGGAAAAT
Downstream sequence
tttcttaaaacacattttgaaaaaactatttaacgatgaaatccagtcacacaagcaaggaatcaaaacaaaagagtgtaggaatctaaaatggtaaaaT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate