Basic Information
VIS ID
TVIS10019532
Fusion event
HBV-LOC107984125 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55661731/54749171 (Hg38)
End
55661820/54749260 (Hg38)
Location type
Intronic
Target gene
LOC107984125
Nearest miRNA
hsa-mir-124-1/Upstream/11852896; hsa-mir-10400/Downstream/6965528;
Nearest TSS
ENST00000518652/Upstream/133104; ENST00000522559/Downstream/353129;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/127698, chr8-CpG: 222/Downstream/351836
Nearby gene
RP1
Upstream sequence
ggtagaagattgaatacttttcccctcagatcaggaatgaggcaaggattccctgtcactcttacttgacagagtgccgcaagttctggctggtacagta
Downstream sequence
gcggagtttgcagtgagtcgagatcacgccactgcactccagcctgggcaacagagcaagactccatctcaaaaaaaaaacaaaacaaaaaaCAAGTAGA
Target sequence
atacaaaaaattagccaggcgtggtgatgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacatgggag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate