Basic Information
VIS ID
TVIS10019533
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
59068667/58156108 (Hg38)
End
59068667/58156108 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/15259833; hsa-mir-10400/Downstream/3558680;
Nearest TSS
ENST00000518652/Upstream/49814; ENST00000638450/Downstream/255156;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/9253, chr8-CpG: 53/Downstream/255139
Nearby gene
LOC101929528
Upstream sequence
tttgcttatacacaatcctatacaatctaatacattgttattattttgaataaactgttatatgttagataaataacatttcatttgtttctctttttta
Downstream sequence
ACCCTCATATTTGTCCCAAAAGACAATGAGTAGCATACTCCTTTTCTCAGCCAAAATACAAAAACTTACCCTTTATGCGAAAATATATCCTTGGGGTAGT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate