MED30 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019534
Fusion event
HBV-MED30 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr8
Cytoband
q24.11
Reference genome
End
118535434/117523195 (Hg38)
Location type
Intron1
Target gene
Nearest miRNA
hsa-mir-12123/Upstream/648377; hsa-mir-10400/Downstream/1801976;
Upstream sequence
tcattgaataaactgaatttcacatggagactattcatatatgtggcatgctgatttttcaattcaaatattccaagcttcttcagctattcctcatatg
Downstream sequence
TTTTTTTTTTTTAAGTTTTTTTTTTTTGTCTGTAAGTTTATTCAATGCAAAATAATCCTCTCCAATTTTACTGAGGTGGCTGACCATGTCCACGACCAAA
Target sequence
CCTGCATTCAAAGCCAAC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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