VISDB Viral Integration Site DataBase

VIS ID

TVIS10019538

Fusion event

HBV-PDE3A integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr12

Cytoband

p12.2

Reference genome

Start

End

20704504/20551570 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-128-3p ; hsa-mir-211-5p ; hsa-mir-3680-3p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-3915 ; hsa-mir-1224-5p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-3928-3p ; hsa-mir-5582-3p ; hsa-mir-8055 ; hsa-mir-129-5p ; hsa-mir-4776-3p ; hsa-mir-1304-5p ; hsa-mir-4677-5p ; hsa-mir-192-3p ; hsa-mir-2116-5p ; hsa-mir-22-5p ; hsa-mir-3613-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-8485 ; hsa-mir-7150 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-7843-3p ; hsa-mir-5585-5p ; hsa-mir-3191-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-942-5p ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-3128 ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-6814-5p ; hsa-mir-3614-3p ; hsa-mir-7849-3p ; hsa-mir-6818-3p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-377-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6846-3p ; hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-3182 ; hsa-mir-3120-5p ; hsa-mir-1237-3p ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-361-5p ; hsa-mir-3171 ; hsa-mir-2115-3p ; hsa-mir-1265 ; hsa-mir-5692a ; hsa-mir-106a-3p ; hsa-mir-6844 ; hsa-mir-4684-3p ; hsa-mir-103a-2-5p ; hsa-mir-8066 ; hsa-mir-1267 ; hsa-mir-3147 ; hsa-mir-367-5p ; hsa-mir-4328 ; hsa-mir-4425 ; hsa-mir-450a-1-3p ; hsa-mir-4652-3p ; hsa-mir-4747-5p ; hsa-mir-5196-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/2878029; hsa-let-7i/Downstream/3660851;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/181235, chr12-CpG: 97/Downstream/21

Upstream sequence

TAGCCGCAGGCCCCAGACACCATGAGCTGGAGGGTCGGGATGGGGCAGCCTCCCTGGTGCAATCGGCACCTGGGCCCCCGGGCCCTGTCAGTGCTGTCGT

Downstream sequence

ggtctgcgcctgccacctGTGCGGGGGCCGGCAGGACCCCGACAAGCAGCTCATGTGCGATGAGTGCGACATGGCCTTCCACATCTACTGCCTGGACCCG

Target sequence

acggacaggattgacagattgatagctctttctcgattccgtgggtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgataacgaacgagactctggcatgctaactagttacgcgacccccgagcg