Basic Information
VIS ID
TVIS10019539
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
28460502/27991296 (Hg38)
End
28460502/27991296 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/358018; hsa-mir-1185-1/Downstream/3023350;
Nearest TSS
ENST00000550708/Upstream/357171; ENST00000548280/Downstream/326845;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1786024, chr14-CpG: 203/Downstream/774387
Nearby gene
MIR3171
Upstream sequence
tttaattcacttcaaatatattgagacttgttttattgctcataattgggtctatattcataaacatttcacttgtgcttgaaaataataggtagtctac
Downstream sequence
catgccttttcgaggtttgatagctcatttatttttagtgctgaataatatactattgtatgaatatctcaccgtttgtttatccattcatctgttgaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate