Basic Information
VIS ID
TVIS10019540
Fusion event
HBV-LOC102724847 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
49202781/49168870 (Hg38)
End
49202875/49168964 (Hg38)
Location type
Intronic
Target gene
LOC102724847
Nearest miRNA
hsa-mir-1225/Upstream/15005197; hsa-mir-11401/Downstream/1123652;
Nearest TSS
ENST00000527434/Upstream/9362; ENST00000564222/Downstream/1588;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/357517, chr16-CpG: 24/Downstream/106248
Nearby gene
CBLN1
Upstream sequence
tgaccctaaccctgacccggaccctgaaccctaatccggaccctgaaccctaacccggaccactgaaccctaacaccgaccctgaaccctaaccccgacc
Downstream sequence
TGGGTGATGGATAAAGGAAGTCATTGTCCAGATGAAAGACTCATGAACTTGGAGACAGGTGATTGCACATGAATCCTAAATATCCCTACTTTCCTGGCTC
Target sequence
GTTATGAAATCTGTTCCTTCTTCTGACGCTTATTTCACTTAGGAGTTGGGATCTTTTCTGTTGTGTCTCAGAACTTCAGGGTTAAGACCCTTCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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