Basic Information
VIS ID
TVIS10019542
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
37866425/40286461 (Hg38)
End
37866514/40286550 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/609682; hsa-mir-122/Downstream/4683532;
Nearest TSS
ENST00000575820/Upstream/220175; ENST00000590220/Downstream/1194518;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/444596, chr18-CpG: 180/Downstream/4392468
Nearby gene
LINC01477
Upstream sequence
atctatatctggtataactattcttgttttatattttattggagtggaacagctcatgtcctcggtctcttgcctcggcaAAGATTAGAttagggttagg
Downstream sequence
tttctgaggggtatcctggaaccaatcctgaatggatatcaaggaacgactATTTAGTGTTTTGATATGATTAACTATAATCAAATGCTAAGTAGAATCT
Target sequence
gatgatttaaagtatatgggggactgtataggttatatgaaaatactatgccattttatataaggtaattgagcattcacagattttgg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate