Basic Information
VIS ID
TVIS10019546
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
16040671/16060026 (Hg38)
End
16040673/16060028 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/5410331; hsa-mir-1-1/Downstream/2410587;
Nearest TSS
ENST00000382410/Upstream/74238; ENST00000616572/Downstream/310608;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/2063604, chr20-CpG: 50/Downstream/513163
Nearby gene
LOC613266
Upstream sequence
CAATATATCTATATAGTGCACACTTACCACTGCAATTTTCCCCAGTCAAGAATGCATACTAAAccaggcaccgtggctcaggcctgtaatcccagcactt
Downstream sequence
taggaaaaCACATATGTTTGGTTATTACCTAGCATTGCGTCTACCTTCCCTCCTTTGAGTCATAGCTGTGGGCTGTGGACCAGCCCTCAATTTTCATTCC
Target sequence
cc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate