Basic Information
VIS ID
TVIS10019548
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
118200607/117657985 (Hg38)
End
118200706/117658084 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/563257; hsa-mir-1182/Downstream/28192503;
Nearest TSS
ENST00000473358/Upstream/52051; ENST00000471680/Downstream/229649;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/50939, chr1-CpG: 73/Downstream/271133
Nearby gene
TENT5C
Upstream sequence
GGTAGTTCGGGCATGAAGAGTGCCCTCCACGTATTTAAGAGATAAAGATACAGCATTTTCTGGAAAGGACAATAGTCCTGCAAGTCCTCCATGCAGGAAC
Downstream sequence
GGAGTGTCCGTGCTGCTGATTGGGCTCAGGGCACAGGTGCTGCTGGATGGTGTTTGGTGCTTTATGTGGTAACCTATTTCCCCAACAGGACATCATGGCT
Target sequence
tgagctcataccatgtgccaggcattgggctacaaagatgaaaaagacatcaatccATTTTTATTTTTCAATATATTTCCCAGAACTTGTGTCATCTTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate