CSF1R _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019549
Fusion event
HBV-CSF1R integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
149436255/150056692 (Hg38)
End
149436255/150056692 (Hg38)
Location type
Intron5
Target gene
CSF1R
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-22-3p
Nearest miRNA
hsa-mir-10397/Upstream/323802; hsa-mir-103a-1/Downstream/1465395;
Nearest TSS
ENST00000502646/Upstream/1872; ENST00000231656/Downstream/4976;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/55453, chr5-CpG: 20/Downstream/76045
Nearest cancer related gene
CSF1R(OG, No orient, 0)
Upstream sequence
aacataataatttggcaatgtacacaggttgttgtgtgtaccaatagttcgttccattttattactgagtagtattcatggaatggatgttccatagttt
Downstream sequence
tgccaggcccttccctaaactctgcacacattgaaccctttttcttttcaacaatcgttatgcccatttttataggtgtagaaactgaggcacagaattt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate