KIAA0319L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019550
Fusion event
HBV-KIAA0319L integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
35938589/35472988 (Hg38)
End
35938678/35473077 (Hg38)
Location type
Intron16
Target gene
KIAA0319L
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-423-3p ; hsa-mir-432-5p ; hsa-mir-218-5p ; hsa-mir-5689 ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-129-5p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-431-5p ; hsa-mir-4294 ; hsa-mir-3194-3p ; hsa-mir-924
Nearest miRNA
hsa-mir-12136/Upstream/803294; hsa-mir-101-1/Downstream/1688486;
Nearest TSS
ENST00000473358/Upstream/2082; ENST00000459931/Downstream/33790;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/203734, chr1-CpG: 95/Downstream/84002
Upstream sequence
actttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtgtacatgtgctatgttggtgtgctgcacccattaactcgtcatttacat
Downstream sequence
gcctttttttttttttttttttttttctttttttttgagacagagtcttgctctgtcacccaggctggagtgcaatggcacaatcttggctgactgcaac
Target sequence
caggctggtcttgaactcctgacctcaggtgatctgcccgcctcagcctcccaaagtgctgggattacaggcatgagccactgcgccca
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate