Basic Information
VIS ID
TVIS10019551
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
85736381/85509258 (Hg38)
End
85736470/85509347 (Hg38)
Fragile sites / regions
FRA2S ; FRA2L
Nearest miRNA
hsa-mir-1285-2/Upstream/5642675; hsa-mir-10b/Downstream/274253;
Nearest TSS
ENST00000437798/Upstream/73838; ENST00000465151/Downstream/29818;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/71326, chr2-CpG: 126/Downstream/29225
Nearby gene
PARTICL
Upstream sequence
AATTTGAATCCCTTCTTTCTCTGAAAGAAACACAGTTTCTAAAATCTTTGTCTTGGGAAGGTATGGTGTATACTTGCCCTCTGATCCATCCCAAACTTAC
Downstream sequence
cctggctaacatggtgaaacctcgtctctacaaaaattagcaaggtgtggtggcaggtgcctgtgataccagctacttgggaggctgaggcaggagaatc
Target sequence
tggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcagatcgcctgaggtcaggagttcgagaccag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate