Basic Information
VIS ID
TVIS10019553
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
106627325/103865044 (Hg38)
End
106627414/103865133 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/5635827; hsa-mir-12126/Downstream/2735795;
Nearest TSS
ENST00000422679/Upstream/435152; ENST00000647310/Downstream/134622;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2126250, chr9-CpG: 38/Downstream/134216
Nearby gene
LOC101928523
Upstream sequence
tttattctagaatacaggctaaggaattaaatcacatgagtacccaaggcttctatgttccaaaggttcgtagaatacctaataataccttaaatacctt
Downstream sequence
agtggttacacagatataaatatttgtTTTAAATTATCCTTATTATCATTCAAGATTAGTATCATTTACGTGTCAATTAAAAAGAGAAAGCtctgttttc
Target sequence
ttagaaaagcaaagaacaagggtatagtcttgggagaaacacaatgatatcaaatgaattgttgaaactattctatatatgctctaggg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate