Basic Information
VIS ID
TVIS10019554
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
121531010/118768732 (Hg38)
End
121531099/118768821 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/4559203; hsa-mir-12126/Downstream/1476158;
Nearest TSS
ENST00000422679/Upstream/28169; ENST00000565320/Downstream/440065;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1023368, chr9-CpG: 97/Downstream/599987
Nearby gene
BRINP1
Nearest cancer related gene
BRINP1(TSG, No orient)
Upstream sequence
ttgcttgagtccaggcattcgaaaccagctgagtaacatagggagatcccatctttacaaaaaaattaaaaactagctaagcatggtggtgcacacctgt
Downstream sequence
ctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcatggtggcaggcgcctggagtcccaggtactagggaggctgagac
Target sequence
ctggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggtcaggagatcgagaccatc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate