MYO16 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019558
Fusion event
HBV-MYO16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
109857562/109205214 (Hg38)
End
109857651/109205303 (Hg38)
Location type
Intron34
Target gene
MYO16
miRNAs that regulate target gene
hsa-mir-4695-3p ; hsa-mir-602 ; hsa-mir-8485 ; hsa-mir-548b-3p ; hsa-mir-3133
Nearest miRNA
hsa-mir-1267/Upstream/1673966; hsa-mir-4502/Downstream/1135655;
Nearest TSS
ENST00000623511/Upstream/3731; ENST00000618966/Downstream/64331;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/63863, chr13-CpG: 604/Downstream/576963
Upstream sequence
tgagttctggagacctaacacacagcatggggacggtagttaatgacaatagattgtgtacttgaaatctgctgagagtaaatcacaggttttctcacca
Downstream sequence
AAATCCTCTTTCTGGGGGAAACAGTAGGCTCAGGTGTTGGTGTTAGAATTGGGCCTGGATGGAACACTCACTCCCTTTGCTGCTTTCAAGTGACTGTTTT
Target sequence
AATAACCAGCTCCAGAACTCTAGTTACAGACTCTGAATATGGGTTTGACCTTCATGCTGTAAACATCATCTCCTTGATCCCAGCCTTTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate