EIF3J _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019560
Fusion event
HBV-EIF3J integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
44843626/44551428 (Hg38)
End
44843719/44551521 (Hg38)
Location type
Intron3
Target gene
EIF3J
miRNAs that regulate target gene
hsa-let-7e-5p ; hsa-mir-155-5p ; hsa-mir-98-5p ; hsa-mir-320a
Nearest miRNA
hsa-mir-1233-1/Upstream/757669; hsa-mir-10393/Downstream/166323;
Nearest TSS
ENST00000557528/Upstream/745; ENST00000536248/Downstream/3103;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/13677, chr15-CpG: 63/Downstream/111572
Upstream sequence
agggttaggggttaggggttaggggttagggttggggttagggttagggttagggttagggttagggttagggttagggttagggtagggttagggttag
Downstream sequence
GGTAAATTCTGTTTTCTAAAATACAGAATTCTCACATCGGTAGTGGTATAGTTTCTAACAGGCTGCAAATATTACCTAGGAATTTGAAGGGCTCTGTGAA
Target sequence
AGAGGTAAAAATTTCagaaaagaaaaaaatagcagagaagataaaagagaaagaacggcaacagaagaaaaggcaagaagaaaTTAAAAAGAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate