GAS7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019561
Fusion event
HBV-GAS7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
10013676/10110359 (Hg38)
End
10013676/10110359 (Hg38)
Location type
Intron13
Target gene
GAS7
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-1255b-5p ; hsa-mir-6744-5p ; hsa-mir-1255a ; hsa-mir-1287-5p ; hsa-mir-4487 ; hsa-mir-450b-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3124-3p ; hsa-mir-6837-3p
Nearest miRNA
hsa-mir-1253/Upstream/1923355; hsa-mir-10226/Downstream/1971540;
Nearest TSS
ENST00000595228/Upstream/48980; ENST00000609088/Downstream/4194;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/205337, chr17-CpG: 142/Downstream/87358
Upstream sequence
tgagaccgcccctcagcctgggcaatagagcgagacttcACAGACCCTCGGAGTACAGTCAGAAATTATTACATTTTTGAATTTCCATTTTGATCTAAAA
Downstream sequence
tgagagtagatagttaactagaggctaggaagggtgtgtgggaaagaggggggatgaagagagtttggttaaggggtacaaacatacagttagacagaag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate