MYH13 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019563
Fusion event
HBV-MYH13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
10269457/10366140 (Hg38)
End
10269589/10366272 (Hg38)
Location type
Intron39
Target gene
MYH13
Nearest miRNA
hsa-mir-1253/Upstream/2179136; hsa-mir-10226/Downstream/1715627;
Nearest TSS
ENST00000595228/Upstream/1596; ENST00000581304/Downstream/6733;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/167017, chr17-CpG: 25/Downstream/271892
Upstream sequence
TTCTCCAAATGCTTGACATACAAAAAGTCCCCAAAGAGGACCTGAGATTGCTGGTCCATTTCTTGGACTCTTAGTCTTATCTGATCTTGTGAGTTATTTT
Downstream sequence
ttttcCTTCCCACTTAATTCTATAACTGACATAAAATGGAGTCAAGTcatacacacacacacgcacacccacacataTCTCTCCATATCTCTCTTAAGAA
Target sequence
TTCCCGTAAGTCCTGTGTGGACTGTTCCTCTTCTCAGAATTTGcttctctcattccccctcggcacctcttccctctactccactacctattttcctcaagtctctttcctctttccttcccttctctcctc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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