Basic Information
VIS ID
TVIS10019564
Fusion event
HBV-MYHAS integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
10290845/10387528 (Hg38)
End
10290845/10387528 (Hg38)
Location type
Intron1
Target gene
MYHAS
Nearest miRNA
hsa-mir-1253/Upstream/2200524; hsa-mir-10226/Downstream/1694371;
Nearest TSS
ENST00000595228/Upstream/4372; ENST00000579914/Downstream/34422;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/188405, chr17-CpG: 25/Downstream/250636
Upstream sequence
ATGAAATAACAGAATTTGGTGGGAAGAAACCCACTCTTCAAGGGGTGTGCTTGAGTGTGTGTGTGTGTGTTTGTGGTGGTGGTGGAGAGAGATGGACACA
Downstream sequence
tgatagctgagtagtatttcattgtatggatataccataatttgttacccattcatttgttgatggatattttggtttttctttttggtttttgccccta
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate