Basic Information
VIS ID
TVIS10019570
Fusion event
HBV-LOC110467531 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
24184955/24002153 (Hg38)
End
24185022/24002220 (Hg38)
Location type
Intronic
Target gene
LOC110467531
Nearest miRNA
hsa-mir-10395/Upstream/3602799; hsa-let-7e/Downstream/11120480;
Nearest TSS
ENST00000633603/Upstream/44223; ENST00000597683/Downstream/31185;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/30196, chr19-CpG: 42/Downstream/3791400
Nearby gene
ZNF254
Upstream sequence
atctgatacaatattgataggttgatcaaaatcttgtaacactgtaatgactgcaaccaactctgctctttgagtcaattgatattgagttttgattact
Downstream sequence
ttggaccatgtttcaagatgggtcatgtgggtagccaacagcgccaccggcctcgtgcacttcttccactgttcttttgaaatgagtgcatggccgaaga
Target sequence
gccttcaccttcattgcgccacagtggctttcgtgcgagcccctgactcgcacacgtgttagaccct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate