Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019571
Fusion event
HBV-HSF2BP integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
Start
End
45019490/43599609 (Hg38)
Location type
Intron2
Target gene
Nearest miRNA
hsa-let-7c/Upstream/648506; hsa-mir-6070/Downstream/10278;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/33927, chr21-CpG: 165/Downstream/58181
Upstream sequence
AAATAGTGTATCAAGTTTCCAATTATCAAGTCTAAAGAGACTGCCCATTCATTTTACTCTTCTAGTATTGAAATATTAAATGTTATTTCTTggccagatg
Downstream sequence
atggtgaaacctcatctctactaaaaatacaaaacttagctgggcgtggtggcgcacacctgtagtcccagctactcgggaggctgaggcaggagaatca
Target sequence
cagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggcaggtcacttgaggtcaggagttcgagaccagcctggccaac
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.