HMGCS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019572
Fusion event
HBV-HMGCS2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
120295171/119752548 (Hg38)
End
120295300/119752677 (Hg38)
Location type
Exon3
Target gene
HMGCS2
Nearest miRNA
hsa-mir-101-1/Upstream/2657820; hsa-mir-1182/Downstream/26097910;
Nearest TSS
ENST00000473358/Upstream/13086; ENST00000608123/Downstream/6737;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39899, chr1-CpG: 21/Downstream/100509
Upstream sequence
gctgcgctgcattctcataaagtcaggcattcctaccctctagatgtttattatggttaagggaaaaaattaataatgtttaaacagacccagacttagg
Downstream sequence
GGAAGCAAAAGCAAGATTGTTACACCTTTTTCATTGTCATTATCACTATTGCCAATCACGAGTTCAACAGAGAGCCAGGTTCTGTGGGAGGTTACACCCT
Target sequence
CCTTATGGTAGAATTGCTCTCTTTGGTTCATTATTTCTGTGAACTCCTCAGGAGACACACACTTTCGGGAGGCTAGGCGTTTTGGCAGGTCTGATGTGCTGGACACCAACTTGTCCAGGGGAGAGCCTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate