Basic Information
VIS ID
TVIS10019573
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
234132143/233223497 (Hg38)
End
234132143/233223497 (Hg38)
Nearest miRNA
hsa-mir-10b/Upstream/672924; hsa-mir-149/Downstream/4287434;
Nearest TSS
ENST00000437798/Upstream/13446; ENST00000485623/Downstream/28074;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18721, chr2-CpG: 72/Downstream/27957
Nearby gene
ATG16L1
Upstream sequence
TGTCGGTCACACGTCAGTGAGGTGGAGGAACGGTGTGTGGAGGCTCCAGGGCCTGCCTGGGTTCCAGGTCTATCACTGGTTTCTCCCTTCACTCTAAACA
Downstream sequence
cccgcctcagcctcccaaaatgctaggattataagtgtgagccaccgtgcccagccaagatttatacattttacataaaatggtacaatattaactctaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate