VIPR1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019574
Fusion event
HBV-VIPR1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
42560003/42518511 (Hg38)
End
42560003/42518511 (Hg38)
Location type
Intron2
Target gene
VIPR1
miRNAs that regulate target gene
hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-500a-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-4494 ; hsa-mir-4499
Nearest miRNA
hsa-mir-12127/Upstream/3380245; hsa-let-7g/Downstream/1595701;
Nearest TSS
ENST00000440867/Upstream/1693; ENST00000495189/Downstream/9142;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15479, chr3-CpG: 22/Downstream/17585
Upstream sequence
TCTTTTCCACAAAGGAAACCTGAGGCTTTTCTGCATTCAGGCCTTTACTCTGAATCTACGGATGCATTGATATTGGTATCATTACTATCATCATTATTTC
Downstream sequence
gaggatcacttgaggtcaggagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcgtggcggcatgg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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