Basic Information
VIS ID
TVIS10019578
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
109024401/108703198 (Hg38)
End
109024490/108703287 (Hg38)
Fragile sites / regions
FRA6F
Nearest miRNA
hsa-mir-10398/Upstream/1918978; hsa-mir-1202/Downstream/10365760;
Nearest TSS
ENST00000381078/Upstream/46852; ENST00000416104/Downstream/48367;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/39390, chr6-CpG: 62/Downstream/144978
Nearby gene
LINC00222
Upstream sequence
ttaaatagctattttctagagtatgatcttaaaatacttctcatgtctcttagtatatTTATTATTTTGAATGGCCCCATGTCTATAATTACTACTTTAA
Downstream sequence
atactgactgtataaaataatatcttgagagagaatatatgtagaattaaaataatacacaaaaaataagaaggaggaaaagggagttgacacattccaa
Target sequence
aaaggaaaagaatttcagatggaagcaaggagttgcagaaaggaatgaagagcattgtaaagggtaaacacatgggaaaatcaaaatta
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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