Basic Information
VIS ID
TVIS10019579
Fusion event
HBV-ZNF479 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
57202625/57134918 (Hg38)
End
57202625/57134918 (Hg38)
Location type
Intron4
Fragile sites / regions
FRA7A
Target gene
ZNF479
Nearest miRNA
hsa-mir-1183/Upstream/179054; hsa-mir-10399/Downstream/270107;
Nearest TSS
ENST00000635602/Upstream/2577; ENST00000563054/Downstream/4946;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/114621, chr7-CpG: 22/Downstream/44963
Upstream sequence
caattttaacaaaaatttcaaggcaattcggtaggcaagggaaaaaatttcaacaaatgctgttgcaactataatatatccacatgcaaaaacatggact
Downstream sequence
cccgcctctgcctcccaaattgccggggttacaggcataagccaGGGTTATAGGCATAAGgctctaaattatttcttgtacgagatccaagaacccaatc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate