Fusion event
HBV-SLC8B1 integration
Detection method
VirusFinder
Disease
Hepatocellular carcinoma (HCC)
End
113741935/113304130 (Hg38)
Nearest miRNA
hsa-let-7i/Upstream/12387; hsa-mir-1178/Downstream/2844430;
Upstream sequence
TTATTTTACTTAGTTTTAAAAGAATGAGTGAGGAGGGCAATGCAGTTAGGAAAGAAAACATGAAAGGAATGCCTTGTCCTGCTCGGCTGGACCCTCAAGA
Downstream sequence
cagtctcccaaagtgctgggattacaggcatgagctaccacacccggccaagatgtcctagctcactcaaagtcatacagccagggacttaagtgatggg
Target sequence
tcagcctcccaagtagctgagattacaggtgtgcaccaccacacctgactaatttttgtatttttagtagagatggggtttcaccacgttggccaggctggtctcgaactcctgacctcaagtgatcctctgcct
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.