Basic Information
VIS ID
TVIS10019581
Fusion event
HBV-SLC8B1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr12
Cytoband
q24.13
Reference genome
End
113741935/113304130 (Hg38)
Location type
Intron1
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7i/Upstream/12387; hsa-mir-1178/Downstream/2844430;
Upstream sequence
TTATTTTACTTAGTTTTAAAAGAATGAGTGAGGAGGGCAATGCAGTTAGGAAAGAAAACATGAAAGGAATGCCTTGTCCTGCTCGGCTGGACCCTCAAGA
Downstream sequence
cagtctcccaaagtgctgggattacaggcatgagctaccacacccggccaagatgtcctagctcactcaaagtcatacagccagggacttaagtgatggg
Target sequence
tcagcctcccaagtagctgagattacaggtgtgcaccaccacacctgactaatttttgtatttttagtagagatggggtttcaccacgttggccaggctggtctcgaactcctgacctcaagtgatcctctgcct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate