Basic Information
VIS ID
TVIS10019584
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
GRCh37/hg19
Start
96085130/95618793 (Hg38)
End
96085135/95618798 (Hg38)
Nearest miRNA
hsa-mir-1260a/Upstream/480807; hsa-mir-1185-1/Downstream/4490621;
Nearest TSS
ENST00000550708/Upstream/45188; ENST00000555032/Downstream/2116;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/83265, chr14-CpG: 53/Downstream/95121
Nearby gene
TCL6
Nearest cancer related gene
TCL6(OG, No orient)
Upstream sequence
acactgctactgggttctgagtgtttctccctcacataggatttcagaacactgctgctgggttctgagtgtttgatcctcacatgggattccagaacaa
Downstream sequence
ccttgacttgtagttgcatcactccaatctctgcctccattgccatgtggctttctcctctctgtgtgtctctctgtatcctctcctcttcctaaaagga
Target sequence
gtgtt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate