ITFG1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019585
Fusion event
HBV-ITFG1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
47249922/47216011 (Hg38)
End
47249922/47216011 (Hg38)
Location type
Intron4
Target gene
ITFG1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-23b-3p
Nearest miRNA
hsa-mir-1225/Upstream/13052338; hsa-mir-11401/Downstream/3076605;
Nearest TSS
ENST00000527434/Upstream/19700; ENST00000564739/Downstream/22278;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/177752, chr16-CpG: 48/Downstream/244775
Upstream sequence
AACCCACACTGTCCTCTGAGACCGAGTGGTgtgacatgcaagtaaatgttccacagcaggctctggccaggggagggcattatttgtagcattcacctat
Downstream sequence
GAATAAATCTAATGTTCCATTACTGTTTTGGGGTAGATCTTTAAAAATCATGCTAAGTAAATATTGTTCCATTCGCTTAAAAAAATAGTAATGGGTAGTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate