EVPLL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019586
Fusion event
HBV-EVPLL integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
18287062/18383748 (Hg38)
End
18287134/18383820 (Hg38)
Location type
Intron9
Target gene
EVPLL
Nearest miRNA
hsa-mir-1253/Upstream/42862; hsa-mir-10226/Downstream/960686;
Nearest TSS
ENST00000595228/Upstream/6086; ENST00000583003/Downstream/2584;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/265, chr17-CpG: 35/Downstream/27885
Upstream sequence
ACCGGCAGCCACTTGTAGGGGTTGACGGTGACACAGAAGAGGCCTGAGTAGGTCTGGGAAGATCAGAACATTTATCATTTGGATCTCGTTTTTACTCAGA
Downstream sequence
aaattagctagaggtggtggcacgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgggc
Target sequence
gatcacttgaggtcaggagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacca
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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